PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.95F2Q
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 453aa    MW: 50438.4 Da    PI: 5.4576
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.95F2QgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.63.4e-321859102
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   ++ed++++ ++sws+++nsfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i r+k 
   Aradu.95F2Q   1 MVEDPSTDPIVSWSATNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLRTITRRKP 85 
                   89************999*****************************************999.........*********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.09E-31183IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-34183IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.8E-52183IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.5E-28183IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MVEDPSTDPI VSWSATNNSF VVWNPPEFAR DLLPKYFKHN NFSSFVRQLN TYGFRKVDPD  60
RWEFANEGFL RGQKHLLRTI TRRKPAHGHS HQQAPQSHGQ SSTAGACVEV GKFGIEEEVE  120
RLKRDKNVLM QELVRLRQQQ QATDSKMQTM AQRLHGMEQR QQQMMSFLAK AVQSPGFFAQ  180
FVQHQSENNR RITEVNKKRR LRPEGISETE PATVPAGQIV KYQPMMNDLA KSMLKQIIKW  240
DASHADALSK NSDNYLIADD TMTSTWPSGS GVTLQEVPPA SLQSSHTPAA TGTQGHIPSA  300
AIPDIPSLPQ VAAPEKVTKD GSSGAPSIHA SQADVIMPDL PSINETETRS NIQMPEKGDE  360
GYMDPNSLGV GASFPIDIEG FSPEIDIDDF LSNPSIWDDL LQTPVPVDIE EDVAKESKGN  420
GVETTENGWD KTQRMDHLTE QMGLLSSDVQ KRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-2318327120Heat shock factor protein 1
5d5u_B3e-2318336129Heat shock factor protein 1
5d5v_B3e-2318336129Heat shock factor protein 1
5d5v_D3e-2318336129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963272.10.0PREDICTED: heat shock factor protein HSF8-like
SwissprotQ401521e-153HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0L9US520.0A0A0L9US52_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T3260.0A0A0S3T326_PHAAN; Uncharacterized protein
STRINGGLYMA01G01990.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-143heat shock transcription factor A1D